PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017716.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SRS
Protein Properties Length: 422aa    MW: 43580.8 Da    PI: 8.3405
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017716.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702207.53.6e-642073643154
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99 
                  s t++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq +++a     a s+ +++  k++r   +++q+++s+t++s+++++ +
  CCG017716.1 207 SATTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMATAGGGGGAGSTgSTSGVKKPRL--ISSQTTTSHTSTSNTTPR-S 301
                  57899*********************************************98888776666555536667777776..578888888888887655.5 PP

       DUF702 100 letss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   +tss        lP  v ++a frcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+
  CCG017716.1 302 YDTSSshqgfkerLPGLVTAPATFRCVRVTAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVET 364
                  5555557899999***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.5E-61209363IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.0E-27211253IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.7E-27314362IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
VATTRSRQLL SDTGAFADWA TSNSSGIRTA GPDDLSLGFN AGPTGGGQT